Simple class for storing the connections between motifs and the underlying beads that are part of the connection. More...

#include <beadmotifconnector.h>

Public Member Functions
void	AddMotifAndBeadEdge (const tools::Edge &motif_edge, const tools::Edge &bead_edge)

std::vector< tools::Edge >	getBeadEdges (const tools::Edge &motif_edge) const
	Returns the bead edges connecting the motifs specified by motif_edge.

std::vector< tools::Edge >	getBeadEdges () const noexcept
	Returns all the bead edges connecting the motifs.

tools::Edge	getMotifEdge (const tools::Edge &bead_edge) const
	Returns the motifs involved between two beads given by bead_edge.

std::unordered_set< tools::Edge >	getMotifEdges () const noexcept
	Returns all the motif edges.

Private Attributes
reduced_edge_to_edges_map	motif_and_bead_edges_

Detailed Description

Simple class for storing the connections between motifs and the underlying beads that are part of the connection.

A graph like this

1 - 2 - 3 - 4 | | 5 - 6

Will be broken up into two motifs a line motif and a loop motif the BeadMotifConnector tracks the connections between the now independ motifs

Motif 0 Motif 1

1 - 2 3 - 4 | | 5 - 6

The motif connection is stored as edge: 0 - 1 The corresbonding bead connection as edge: 2 - 3

Definition at line 84 of file beadmotifconnector.h.

Member Function Documentation

◆ AddMotifAndBeadEdge()

void votca::csg::BeadMotifConnector::AddMotifAndBeadEdge	(	const tools::Edge &	motif_edge,
		const tools::Edge &	bead_edge
	)

Definition at line 29 of file beadmotifconnector.cc.

◆ getBeadEdges() [1/2]

vector< Edge > votca::csg::BeadMotifConnector::getBeadEdges ( ) const

noexcept

Returns all the bead edges connecting the motifs.

Definition at line 44 of file beadmotifconnector.cc.

◆ getBeadEdges() [2/2]

vector< Edge > votca::csg::BeadMotifConnector::getBeadEdges ( const tools::Edge & motif_edge ) const

Returns the bead edges connecting the motifs specified by motif_edge.

Definition at line 34 of file beadmotifconnector.cc.

◆ getMotifEdge()

Edge votca::csg::BeadMotifConnector::getMotifEdge ( const tools::Edge & bead_edge ) const

Returns the motifs involved between two beads given by bead_edge.

Definition at line 53 of file beadmotifconnector.cc.

◆ getMotifEdges()

unordered_set< Edge > votca::csg::BeadMotifConnector::getMotifEdges ( ) const

noexcept

Returns all the motif edges.

Definition at line 59 of file beadmotifconnector.cc.

Member Data Documentation

◆ motif_and_bead_edges_

reduced_edge_to_edges_map votca::csg::BeadMotifConnector::motif_and_bead_edges_

private

Definition at line 99 of file beadmotifconnector.h.

The documentation for this class was generated from the following files:

csg/include/votca/csg/beadmotifconnector.h
csg/src/libcsg/beadmotifconnector.cc

Public Member Functions

Private Attributes